PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g029550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 355aa    MW: 40192.6 Da    PI: 6.3441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g029550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.65.9e-052613001155
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R +++ ++++ L +l+ +      +K + a++L++A+ YI+ Lq
  Sopen02g029550.1 261 VRKEKLGDRISALHRLVAPF-----GKTDTASVLTEAIGYIQFLQ 300
                       57778889999999999998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.46E-6248303No hitNo description
PROSITE profilePS5088811.947250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-7260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-10260312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MDSTNLYNHH QLQQLSGYPF FSTGVSTLHD WNSGITSEEE YYYKLGHMKR ISSEELMWKR  60
GIDTFPLMNT SMFHDGHHES SNDQLDDKNN KAGYIISNDY FLKMKDMNSL SNNMFKESYF  120
ENEQQHAFDL NENLLSEDSY MNNANNSSYV PSHDMEYSDF QGLKLAFNGV TFKNSHDSNS  180
NSNSNCFGHF TTERMSSGFA DGLQELTHSP SSKKITSNVR KNIGVSSKAK RSAEDEANPC  240
QEASKKSRVT SQSPSTLMLK VRKEKLGDRI SALHRLVAPF GKTDTASVLT EAIGYIQFLQ  300
DQILTLSMPY TKSTERKLHH INLKDSSIEA VLDLESRGLC LVPTSFSSYI SQSCD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064411.10.0PREDICTED: transcription factor bHLH110-like
TrEMBLK4BB020.0K4BB02_SOLLC; Uncharacterized protein
STRINGSolyc02g084880.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134431213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.11e-30bHLH family protein